Thomas' Plant-Related Blog

On plant science. Mostly.

Posts Tagged ‘community ecology

Why trees have to leave home

with 2 comments

Tropical forests are a challenge for ecologists, because there are so many species. It’s not just a practical challenge to identify them, but a theoretical question of why they’re all there. Why don’t the better adapted ones win out, while others go extinct? Does every species really have its own ‘niche’—some set of conditions where it outcompetes everything else? Or are the different species much the same? (I’ve discussed neutral theory before)

A third idea is that trees can’t grow too close to their parents (or others of the same species), perhaps because pests and diseases spread between them. This is called the Janzen-Connell hypothesis, after the scientists who, independently, thought of it. If each species has to space itself out to escape pests, other species can grow in the gaps, without outcompeting each other. Some new evidence backs this up.

One study analysed where thousands of seedlings were growing, on an intensely studied plot on Barro Colorado Island, Panama. After five years, saplings with others of the same species nearby were less likely to have survived. Interestingly, the effect was apparently greater for rare species than for common ones; perhaps that helps to explain why they are rare.

Another experiment looked at seedlings grown in pots, with soil taken from under the same tree species, or another one. Seedlings grown in ‘home’ soil once again fared worse, suggesting that a disease or a pest in the soil could be the key.

Owen T. Lewis (2010) Ecology: Close relatives are bad news. Nature (News & Views) 466, 698–699

Ecology: Close relatives are bad news


Written by Thomas Kluyver

9 August, 2010 at 11:54 pm

Posted in Uncategorized

Tagged with

Species area curves & neutral theory

with 5 comments

How many species are there here? It’s a beguilingly simple question, and a fundamental area of interest. A moment’s thought shows that the bigger here is, the more species there will be. So, if we start from a little patch of my lawn, and take successively larger heres until we’ve included the whole world, we can draw a ‘species area curve’. It generally looks a bit like this:

Graph of species vs sampling area (on log axes). Goes up steeply at local scales, then increases more gradually at regional scales, before turning steeper again at the largest scales.

It’s got three distinct parts: at local scales, the number of species increases sharply as you look at larger areas, then at regional scales it slows down, but at the very largest scales it picks up again. It’s easy to come up with possible explanations in words: at first, the number of species increases as you happen to ‘catch’ more species in your area, then it levels off because you’re mostly finding the same species again, and finally climbs as you encounter ‘exotic’ species that don’t live near your starting point. But can a mathematical model of species come up with the same sort of result?

Enter neutral theory. Laid out in a book by Stephen Hubbell, it tried to model a group of species by ignoring all the differences between them, imagining that every individual has the same chance of dying, the same chance of reproducing, and the same (small) chance of producing a new species. This is, to say the least, controversial, but remember that it’s a model: of course reality’s not like that, what’s interesting is how well such a simple model fits ecological patterns like the species area curve.

The very simplest version of neutral theory completely disregards where individuals are: when there’s a gap to be filled, any individual has the same chance of filling it. An extra development is the idea of a ‘metacommunity’, where individuals die and reproduce within one population, but occasionally disperse from one population to another

That sort of model can’t study the intricacies of species-area curves, though. Both of the studies referenced below used versions of neutral theory that do take account of where each individual is: ‘spatially explicit’ models, in the jargon.

Simple model represented by pie chart, metacommunity model by four connected pie charts, and spatial models by a grid of coloured squares.

James Rosindell and Stephen Cornell made a computer simulation, in which each individual occupied one square of a grid (it helps to imagine trees in a forest, rather than moving animals). When one dies, its square is most likely to be filled by the offspring of a nearby individual. This led to a species area curve with more or less the right shape, and by running the simulation many times, with different settings, they were able to get a decent fit to real-world data; it turned out that their original model had favoured the nearby individuals a bit too much when filling gaps, and they had to allow slightly more dispersal from farther away.

Computer simulations are unwieldy, though. For every change, the model must be run several times over, and some changes will make it slower: Rosindell and Cornell admit that at least one possibility was too “computationally expensive” to test. So James O’Dwyer and Jessica Green set out to make a mathematical model, a set of equations, based on probabilities, to act as a shortcut between the settings and the result.

They, too, start off with a grid, except that they allow more than one individual to share a square. The equations for this I think I can understand. Then they turn it into a different type of equation (a “moment generating function”), and then work out what happens if you make the squares of the grid infinitesimally small. At this point they use some maths from quantum field theory, the proportion of Greek letters goes up, and curly Z and downward-pointing-triangle put in appearances, so I won’t pretend to understand it at all. The result, however, is a curve with three parts, and realistic numbers for things like the speciation rate do give it the right shape.

So what does this tell us? Well, it seems that the pattern we see for the number of species in different sized areas can be explained without considering either biological factors, such as competition and adaptation, or geographical ones, such as the arrangement of landmasses. And it sets the bar for anyone studying the effect of such things: can they explain the pattern better than a neutral model does?


O’Dwyer, J., & Green, J. (2010). Field theory for biogeography: a spatially explicit model for predicting patterns of biodiversity Ecology Letters, 13 (1), 87-95 DOI: 10.1111/j.1461-0248.2009.01404.x
Rosindell, J., & Cornell, S. (2009). Species–area curves, neutral models, and long-distance dispersal Ecology, 90 (7), 1743-1750 DOI: 10.1890/08-0661.1

Written by Thomas Kluyver

6 June, 2010 at 11:00 pm

Posted in Papers

Tagged with